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Fig. 1 for example), and 1 of 182 sarcomas. Mutations were not

detected in 33 breast cancers, 15 gliomas, 23 prostate cancers, 14

lung cancers, or 19 head and neck squamous cell carcinomas. Ten of

the 35 ovarian tumours examined were classified as borderline (low

malignant potential) lesions and 4 of 5

BRAF

mutations found in

ovarian neoplasms were in this subcategory. The single primary

sarcoma in which a

BRAF

mutation was found was classified as a

malignant fibrous histiocytoma.

Although

BRAF

mutations are found in a wide range of cancers,

there is a trend towards the occurrence of mutations in cancer types

in which a substantial proportion of cases are known to harbour

RAS

mutations (for example, malignant melanoma, colorectal

cancer and borderline ovarian cancers

4–6

). The apparent association

between the presence of

BRAF

and

RAS

mutations in similar cancer

signalling pathway controlling proliferation and differentiation

operates through activation of

BRAF

and that this gene is mutated

in most melanomas suggests a possible explanation for the high

frequency of

BRAF

mutation in melanomas relative to other cancer

types.

Our analysis reveals mutations in two regions of the

BRAF

kinase

domain. Mutations were very similarly distributed in cancer cell

lines and primary cancers. A total of 89% of mutations are within or

immediately adjacent to the activation segment, a region of 10–30

amino acids bounded by almost invariant DFG and APE motifs

10

.

Acidic substitutions at a single amino acid residue (usually V599E

and one instance of V599D) account for 92% of activation segment

mutations with five further mutations altering residues E585, F594,

G595 and L596 (Table 1). These residues are identical at the

Table 1

BRAF

mutations in human cancer

BRAF

mutations

Cancer cell lines

Primary tumours

(1)

(2)

(3)

(4)

(5)

(6)

(7)

(8)

(1)

(2)

(3)

(4)

(5)

(6)

Nucleotide

Amino acid Mel. Colo. ca. Glioma Lung ca. Sarcoma Breast Ovarian Other Mel. STC Mel. Colo. ca. Ovarian* Sarcoma Other† Total

...................................................................................................................................................................................................................................................................................................................................................................

G1388A

G463E

1

1

G1388T

G463V

1

1

G1394C

G465A

1

1

G1394A

G465E

1

1

G1394T

G465V

1

1

G1403C

G468A

2

2

G1403A

G468E

1

1

G1753A

E585K

1

1

T1782G

F594L

1

1

G1783C

G595R

1

1

C1786G

L596V

1

1

T1787G

L596R

1

1

T1796A

V599E 19

5

4

5

1

1

11

5

2

3

1

0 57

TG1796-97AT

V599D 1

1

Total

20

7

4

4

5

1

1

1

12

6

4

5

1

0 71

No. samples screened

34

40

38

131

59

45

26 172

15

9

33

35

182

104 923

Per cent

59% 18% 11% 3% 9% 2% 4% 0.6% 80% 67% 12% 14% 0.5% 0% 8%

...................................................................................................................................................................................................................................................................................................................................................................

Amino acid residues are grouped in blocks. Three further

BRAF

coding sequence variants were identified (G2041A R681Q in the HEC1A endometrial cancer cell line, T974C I325T in the ZR-75-30

breast cancer cell line, and C2180T A727V in the H33AJ-JA1 T-ALL cell line). These were not present in 341 control DNAs. Lane numbers (in parentheses) are provided for convenience. Mel.,

..............................................................

Mutations of the

BRAF

gene

in human cancer

Helen Davies

1,2

, Graham R. Bignell

1,2

, Charles Cox

1,2

, Philip Stephens

1,2

,

Sarah Edkins

1

, Sheila Clegg

1

, Jon Teague

1

, Hayley Woffendin

1

,

Mathew J. Garnett

3

, William Bottomley

1

, Neil Davis

1

, Ed Dicks

1

,

Rebecca Ewing

1

, Yvonne Floyd

1

, Kristian Gray

1

, Sarah Hall

1

,

Rachel Hawes

1

, Jaime Hughes

1

, Vivian Kosmidou

1

, Andrew Menzies

1

,

Catherine Mould

1

, Adrian Parker

1

, Claire Stevens

1

, Stephen Watt

1

,

Steven Hooper

3

, RebeccaWilson

3

, Hiran Jayatilake

4

, Barry A. Gusterson

5

,

Colin Cooper

6

, Janet Shipley

6

, Darren Hargrave

7

, Katherine

Pritchard-Jones

7

, Norman Maitland

8

, Georgia Chenevix-Trench

9

,

Gregory J. Riggins

10

, Darell D. Bigner

10

, Giuseppe Palmieri

11

,

Antonio Cossu

12

, Adrienne Flanagan

13

, Andrew Nicholson

14

Judy W. C. Ho

15

, Suet Y. Leung

16

, Siu T. Yuen

16

, Barbara L. Weber

17

,

Hilliard F. Seigler

18

, Timothy L. Darrow

18

, Hugh Paterson

3

,

Richard Marais

3

, Christopher J. Marshall

3

, Richard Wooster

1,6

,

Michael R. Stratton

1,4

& P. Andrew Futreal

1

1

Cancer Genome Project, The Wellcome Trust Sanger Institute, Wellcome Trust

Genome Campus, Hinxton, CB10 1SA, UK

3

Cancer Research UKCentre for Cell and Molecular Biology, Chester Be tty Labs,

Institute of Cancer Research, London SW3 6JB, UK

4

Section of Cancer Genetics;

6

Section of Molecular Carcinogenesis; and

7

Section

of Paediatrics, Institute of Cancer Research, Sutton, Surrey SM2 5NG, UK

5

Department of Pathology, Western Infirmary, University of Glasgow, S11 6NT,

UK

8

Department of Biology, YCR Cancer Research Unit, University of York,

York YO10 5YW, UK

9

Queensland Institute of Medical Research, RBH Post Office Herston, Queensland

4029, Australia

10

Department of Pathology, and

18

Department of Surgery, Duke University

Medical Centre, Durham, North Carolina 27710, USA

11

Institute of Molecular Genetics, C.N.R., Loc. Tramariglio, Alghero 07040, Italy

12

Department of Pathology, University of Sassari, Azienda USL1, Sassari 07100,

Italy

13

Royal Free

&

University College Medical School, London WC1E 6JJ, UK

14

Royal Brompton Hospital, London SW3 6NP, UK

15

Department of Surgery, and

16

Department of Pathology, The University of Hong

Kong, Queen Mary Hospital, Hong Kong

17

Abramson Family Cancer Research Institute, University of Pennsylvania Cancer

Center, Philadelphia, Pennsylvania 19104, USA

2

These authors contributed equally to this work

.............................................................................................................................................................................

Cancers arise owing to the accumulation of mutations in critical

genes that alter normal programmes of cell proliferation, differ-

entiation and death. As the first stage of a systematic genome-

wide screen for these genes, we have prioritized for analysis

signalling pathways in which at least one gene is mutated in

human cancer. The RAS–RAF–MEK–ERK–MAP kinase pathway

mediates cellular responses to growth signals

1

. RAS is mutated to

an oncogenic form in about 15% of human cancer. The three

RAF

genes code for cytoplasmic serine/threonine kinases that are

regulated by binding RAS

1–3

. Here we report

BRAF

somatic

missense mutations in 66% of malignant melanomas and at

lower frequency in a wide range of human cancers All mutations

are within the kinase domain, with a single substitution (V599E)

accounting for 80%. Mutated BRAF proteins have elevated kinase

phoblastoid cell lines from the same individuals were screened for

sequence variants through the coding exons and intron–exon

junctions of the

BRAF

gen using a capillary-based modified

heteroduplex method followed by direct sequencing of polymerase

chain reaction products. (Exon 1, containing 135 base pairs (bp) of

coding sequence, failed to amplify despite the use of five different

primer sets.) Three single-base substitutions were detected. T o

were in

BRAF

exon 15: T1796A leading to a substitution of valine by

glutamic acid at position 599 (V599E) in the melanoma cell line

Colo-829, and C1786G leading to L596V n th NSCLC cell line

NCI-H2087 (Fig. 1). A further mutation was found in exon 11:

G1403C leading to G468A in the NSCLC cell line NCI-H1395. None

of the three changes were present in the lymphoblasto d cell lines

from the same individuals, indicating that the variants were soma-

tically acquired mutations.

l tters to n ture

§

677 pacientes melanoma del MDA

– 47% mutacione en BRAF

– 20% mutaciones en NRAS

– 33% wild-type

§

Jakob JA,

et al.

J Clin Oncol 2011

“Th high frequency of BRAF mutations i lanom and the

relative lack of effective therapies for advanced stages suggest

that inhibition of BRA activity may be an important new strategy

in the treatment of metastatic melanoma”

Nature 2002